Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSSFYKQRKGKLVCGVVAGLADKYNWDLALSRVLIALILYFTKFGLLLYILLAVFLPYKEDIIETRRQGPRRRKDAEPVDDDGWFW
1YTR Chain:A ((1-26))
-KSSAYSLQMGATAIKQVKKLFKKWGW------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YTR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3762 for 89 contacts (-42.3/contact) +
2D Compatibility (PS) -2599 + (NN) -681 + (LL) 5340
1D Compatibility (HY) -800 + (ID) 450
Total energy: -2952.0 ( -33.17 by residue)
QMean score : 0.138
(partial model without unconserved sides chains):
PDB file :
Tito_1YTR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YTR-query.scw
PDB file :
Tito_Scwrl_1YTR.pdb
: