Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKKPIIIGVTGGSGGGKTSVSRAILSNFPDQ-------KITMIEHDSYYKDQSHLTFE--ERVKTNYDHPLAFDTNLMIEQLNELIEGRPVDIPVYDYTKHTRSDRTIRQDPQDVIIVEGILVLEDQRLRDLMDIKLFVDTDDDIRIIRRIKRDMEERDRSLDSIIEQYTEVVKPMYHQFIEPTKRYADIVIPEGVSNIVAIDLINTKVASILNEAK
2JEO Chain:A ((21-234))
--MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVR----DLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDI
General information:
TITO was launched using:
RESULT:
Template:
2JEO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83693 for 1552 contacts (-53.9/contact) +
2D Compatibility (PS) -22108 + (NN) -10763 + (LL) 536
1D Compatibility (HY) -22400 + (ID) 4200
Total energy: -142628.0 ( -91.90 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_2JEO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JEO-query.scw
PDB file :
Tito_Scwrl_2JEO.pdb
: