Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRHADADILKRHYAELTDRPFFPTLVDYMTSGPVIIEVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
2HVD Chain:C ((5-135))
-ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCI-----QVGRNIIHGSDSVESAEKEIGLWFHP
General information:
TITO was launched using:
RESULT:
Template:
2HVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67230 for 999 contacts (-67.3/contact) +
2D Compatibility (PS) -13988 + (NN) -5212 + (LL) -36
1D Compatibility (HY) -13600 + (ID) 3650
Total energy: -103716.0 ( -103.82 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_2HVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HVD-query.scw
PDB file :
Tito_Scwrl_2HVD.pdb
: