Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEKEKMLAGQYYRPSAPELRKDREVALKNMQAFNNEDNSS--KRNVILQKWFGATGKSIHMEQRFVCDYGCNIYVGENFYANFNQTFLDVCEIRIGDNCMFGPNCQLLTPLHPLDPIERNSGLEYGAPIQIGNNVWLGGGVTILPGVVLGDNVVVGAGSVVTKSFENNVVIAGNPAKIIKKLA
1KRV Chain:C ((3-185))
MPMTERIRAGKLFTDMCEGLPEKRLRGKTLMYEFNHSHPSEVEKRESLIKEMFATVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCRVIREIN
General information:
TITO was launched using:
RESULT:
Template:
1KRV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128627 for 1393 contacts (-92.3/contact) +
2D Compatibility (PS) -20287 + (NN) -12283 + (LL) 0
1D Compatibility (HY) -14400 + (ID) 3650
Total energy: -179247.0 ( -128.68 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_1KRV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KRV-query.scw
PDB file :
Tito_Scwrl_1KRV.pdb
: