Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTVYLSLGSNIGDRETFLKQALFSIDHLQKTKVAQISAIYETAAWGNTNQEDFFNICCQVETDLAPFELLDYCQEIEKRLKRVRH-EHWGPRTIDIDILLFGNQVINQEDLVVPHPYMTKRAFVLVPLLEIAPQLSLPNGSKLEDYL-----EKLNLGEVHYLKPVE
3UD5 Chain:A ((1-156))
-TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW---------
General information:
TITO was launched using:
RESULT:
Template:
3UD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134735 for 1139 contacts (-118.3/contact) +
2D Compatibility (PS) -15887 + (NN) -5625 + (LL) 744
1D Compatibility (HY) -14400 + (ID) 3350
Total energy: -173253.0 ( -152.11 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_3UD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UD5-query.scw
PDB file :
Tito_Scwrl_3UD5.pdb
: