Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKDKKIEIQISDA---QVTVNGTKVDGYQLVIGKKI---------VGQIAELDSKFA-------VIKGEQVSGFYKNLDQAM--GNI----IEEYNLNR----------
1TDP Chain:A ((1-111))
MDIKSQTLYLNLSEAYKDPEVKANEFLSKLVVQCAGKLTASNSENSYIEVISLLSRGISSYYLSHKRIIPSSMLTIYTQIQKDIKNGNIDTEKLRKYEIAKGLMSVPYIYF
General information:
TITO was launched using:
RESULT:
Template:
1TDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16220 for 538 contacts (-30.1/contact) +
2D Compatibility (PS) -8107 + (NN) -2690 + (LL) 0
1D Compatibility (HY) -7600 + (ID) 650
Total energy: -35267.0 ( -65.55 by residue)
QMean score : 0.332
(partial model without unconserved sides chains):
PDB file :
Tito_1TDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TDP-query.scw
PDB file :
Tito_Scwrl_1TDP.pdb
: