Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYLKSLSIKNYRKYGEEVQTINFAHSKWSEMSGAEDESEKINRTEEYISKSSSLIVGKNNSGKSTIVKLLNTLQNTKSGSRNIFKYTDFNLKMLSDWYRFNIDNKSKEDIESIDKSDFPKLEFQLILGIDDENDLISSFEDILILGGIETVGTHENQEVAEVTIDVKYEVADVQSFLEELVKIKSSPREKIEQYDQGYQKELRYRKFLSLFSSNYFVLNFYPIRRDEPAKEFSLSSLLKVATIEANTVKNDKTLSQAYNKIVSTYIKNNDIVEIDSLVGDINYQVKDMVDTNIKDILQSAVSSIESTKNLKMNLHPDVTLEKIFANSIIYEYQEGNNNIPESQFGMGYTNLMVIIAKIVDYIELYSEKDINGSVNILCIEEPESFMHPQMQELFIKNISKAIATLLGKKQQLDTFQIIITTHSTHILNSKIQSGNTLNNISYLGQVGVNNIIKNVSDDKIASGRDIDKKAYEYIKKYLRLEITDIFFADAVVLVEGVSEETYLRYEIDRHSILKNHHVKVYRIDGAYAHQFISLLDLLGVRTVIFTDLDLKRSESEKKVDIKDNAEPDVIPSNIPDLEEKYGGVASSLTTNGTIQYFVKKLLNDDKAKYDKINSKIIEILTDKEELVVEYNNISMYSQGKINKYYATSFEEAIVLTNAGNEDENKYKKSLIKALQYVHPNMRYFGDIDETSEIADKSYMYQVKLSDGKSKFSTGIVYLSITDKEFSLKRPQYVESGLNLLCGYFEE |
1W1W Chain:A ((328-402)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FKDMEYLSGGEKTVAALALLFAIN--S------YQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN---------PDLQFIVISLKNTMFEKSDALVGVYRQQQENSSKIITLDLSNY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1W1W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -40404 for 447 contacts (-90.4/contact) +
2D Compatibility (PS) -8192 + (NN) -4511 + (LL) 43632
1D Compatibility (HY) -800 + (ID) 250
Total energy: -10525.0 ( -23.55 by residue)
QMean score : 0.424
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