Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFNIFKRLNGKEWLMIVASTILVCLAVWMDLKTPEYMSDITRMLQTKGTKLEALWDPGLKMLAFSFGSFLVAVMVGFLGARTAASFTSRLRSDIFNHVMDYSDAEIKRFSIPSLLTRTTNDLTQLQILIVMGMQVVTRGPIMAIWALTKIWGKSDQWTGAVGVAVIIVMILLSVLLLLAFPRQRQIQGFTDALNATTREALSGVRVIRAYNAEKYQTDKFKRENDDLTKLNLFVYRLMSLMNPVMTVVSSGLTLAIYWIGSYLINDISVPKVTGTSVSVLAAKSAITDRVDLFSNMVVFSSYAMQVVMGFMMMVAIFIIMPRALVSARRINEVLTLAPTVTFKENSHIQSAQKGQIEFQDVSFHYSKDSEAVIEHVSFKADTGQTVAFIGSTGSGKSTLVNLVTRFYDATEGAIKLDGIDIKEYSHNDLNNKIGYIPQKAVLFSGTVRSNMILGESGREELSDEEIWQALELAQAKEFIEAKEKGLDTEVAQGGSNFSGGQKQRLAIARALARHPEILIFDDSFSALDYKTDHILRHELKEKTAAMTKLIVAQRISTIMDADLILVLDQGKVVGQGTHKELLSNNEVYQEIAYSQLSKEELENEN |
1MV5 Chain:B ((7-240)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VDFAYD-DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG--DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQLTVG------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1MV5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -100284 for 1772 contacts (-56.6/contact) +
2D Compatibility (PS) -24713 + (NN) -4385 + (LL) 32996
1D Compatibility (HY) -22400 + (ID) 4600
Total energy: -123386.0 ( -69.63 by residue)
QMean score : 0.518
|
|
|