Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRKEIIDDVTMKRAITRITYEIIERNKNLDNIVLAGIKTRGVFLAKRIQERLKQLENLDIPVGELDTKPFRDDMKVEVD-------TTTMPVDITDKDIILIDDVLYTGRTIRAAIDNLVSLGRPSRVSLAVLIDRGHRELPIRADYVGKNIPTSQFEEILVEVMEHDGYDRVSIIDPS
4P83 Chain:B ((8-178))
-----IMDEQAIRRALTRIAHEIIERNKGIDGCVLVGIKTRGIYLARRLAERIEQIEGAPVPVGEIDITLY---------DDEPLVKGTNVPFPVTERNVILVDDVLFTGRTVRAGMDAVMDLGRPARIQLAVLVDRGHRELPIRADFVGKNVPTSRSELIVVELDEVDQNDQVSIHEN-
General information:
TITO was launched using:
RESULT:
Template:
4P83.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116604 for 1237 contacts (-94.3/contact) +
2D Compatibility (PS) -16848 + (NN) -3584 + (LL) 1376
1D Compatibility (HY) -18800 + (ID) 4450
Total energy: -158910.0 ( -128.46 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_4P83.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P83-query.scw
PDB file :
Tito_Scwrl_4P83.pdb
: