Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKEDIKKQVRRAFDFRMAIRVYNNNDIPKEDMEYILDTAWLSPSSVGLEGWRFLVLDRQTIAKFRDKLKEVAWGAQYQLDTASHFVLLLAEKG-AY-YNADSMINSLVRRGLGDPAALESRIPLYKSFQENDMKIDSERSLWDWTAKQTYIALGNMMTAAAMIGVDSCPIEGFDYEKVNNILSKEGLIDDK-KEAISCMVSFGYRLREPK---HSRARKERQEVITWVE
3OF4 Chain:A ((2-208))
-------MYLEKLQQWRYATADFSGAHITDDVLDKLLNTTRLTASSYGLQPYCTLVIRNKGL---REQLVNHSFGQQ-KVADSSALVIFAAKTGAVADIVDPYISELSQQRQL-TNEEAENTRNYFTQKLQ----AMSAATRKEWAVRQAYIGLGTFLLAAAELEVDSCPMEGIEHDAYDNILSL----K-DLGLSTVFACPVGYRSEADTTQFQKKVRQPLSRFKVVL-
General information:
TITO was launched using:
RESULT:
Template:
3OF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102013 for 1476 contacts (-69.1/contact) +
2D Compatibility (PS) -21528 + (NN) -3106 + (LL) 1424
1D Compatibility (HY) -9600 + (ID) 2400
Total energy: -137223.0 ( -92.97 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_3OF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OF4-query.scw
PDB file :
Tito_Scwrl_3OF4.pdb
: