Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MD-ETVKLNHTCVICDQEKN------RGIHLYTKFICLDCER-----KVISTSTSDPDYAFYVKKLK---SIHTPPLYS
2LQ6 Chain:A ((9-87))
MNIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCDVHTPPGST
General information:
TITO was launched using:
RESULT:
Template:
2LQ6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3825 for 262 contacts (-14.6/contact) +
2D Compatibility (PS) -6931 + (NN) -1508 + (LL) 0
1D Compatibility (HY) -400 + (ID) 650
Total energy: -13314.0 ( -50.82 by residue)
QMean score : 0.160
(partial model without unconserved sides chains):
PDB file :
Tito_2LQ6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LQ6-query.scw
PDB file :
Tito_Scwrl_2LQ6.pdb
: