Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | --------MYNVIGVRFKKAGKIY---YFDPNGFHIEHDSCVIVETVRGVEYG----------------QVVIANKQV----------DEHDVVLPLRKVIRVADDRDLLIVEENKQEALSAFDICQKK-----VIEHG-----------LDMKLVDVEFTFDRNKVIFYF---------TADGRVDFRELVKDLAS------IF---KTRIELRQIGVRDEAKMLGGIGPCGRMLCCSTFLGDF--EPVSIKMAKDQNLSLNPTKISGLCGRLMCCLK--YENDEYETAKEQLPDIGEMITTANGPAKVVGLNILERVL--------QVELINR-------EKVIEYTWEELLEEGVVSAQTTD------------------------------------ |
2CY8 Chain:A ((2-445)) | SILNDYKRKTEGSVFWAQRARSVMPDGAFDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQYAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGTTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGRGSVFLSAQHEREHVEHLVTTFDRVLDRLADENLLSWQG |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CY8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -81287 for 1942 contacts (-41.9/contact) +
2D Compatibility (PS) -28898 + (NN) -4075 + (LL) 0
1D Compatibility (HY) -2000 + (ID) 1950
Total energy: -118210.0 ( -60.87 by residue)
QMean score : 0.202
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