Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--------MYNVIGVRFKKAGKIY---YFDPNGFHIEHDSCVIVETVRGVEYG----------------QVVIANKQV----------DEHDVVLPLRKVIRVADDRDLLIVEENKQEALSAFDICQKK-----VIEHG-----------LDMKLVDVEFTFDRNKVIFYF---------TADGRVDFRELVKDLAS------IF---KTRIELRQIGVRDEAKMLGGIGPCGRMLCCSTFLGDF--EPVSIKMAKDQNLSLNPTKISGLCGRLMCCLK--YENDEYETAKEQLPDIGEMITTANGPAKVVGLNILERVL--------QVELINR-------EKVIEYTWEELLEEGVVSAQTTD------------------------------------
2CY8 Chain:A ((2-445))SILNDYKRKTEGSVFWAQRARSVMPDGAFDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQYAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGTTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGRGSVFLSAQHEREHVEHLVTTFDRVLDRLADENLLSWQG


General information:
TITO was launched using:
RESULT:

Template: 2CY8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81287 for 1942 contacts (-41.9/contact) +
2D Compatibility (PS) -28898 + (NN) -4075 + (LL) 0
1D Compatibility (HY) -2000 + (ID) 1950
Total energy: -118210.0 ( -60.87 by residue)
QMean score : 0.202

(partial model without unconserved sides chains):
PDB file : Tito_2CY8.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2CY8-query.scw
PDB file : Tito_Scwrl_2CY8.pdb: