Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSVKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRSANVIAAHVDHRFRGA-ESEEDMRFVQAYCKAEQLVCETAQINVTAYA-------Q----EKGLNKQAAA-RDCRYQFFEEIMSKHQADYLALAHHGDD---QVETMLMKLAKGTLGT-----GLAGMQPVRRFGTGRIIRPFLTITKEEILHYCHENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQSLTKDEMNKVITSQSNTSVEINSSQLLALPMPLQRRGVQLILNYLYENVPSSFSAHHIQQFLDWAENGGPSGVLDFPKGLKVVKSYQTCLFTFEQWQCKNVPFEYQISGAADETAVLPNGYLIEARHYADSPEEHGNAVFITSEKKVRFPLTIRTRKAGDRIKLKGMNGSKKVKDIFIDKKLPLQERDNWPIVTDASGEIIWIPGLKKSIFEDLVIPNSDRIVLQYRQHEKCRGQAKS |
| 2HMA Chain:A ((8-209)) | ---------------SKTRVVVGMSGGVDSSVTALLLKEQ---GYDVIGIFMKNWDDTDCTATEDYKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVARDEDGTV--HMLRGVDNGKDQTYFLSQLSQ---EQLQKTMFPLGHLEKPEVRRLAEEAGLSTAKKKDSTGICFI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2HMA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -95341 for 1317 contacts (-72.4/contact) +
2D Compatibility (PS) -18477 + (NN) -5086 + (LL) 20012
1D Compatibility (HY) -4400 + (ID) 1550
Total energy: -104842.0 ( -79.61 by residue)
QMean score : 0.411
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