Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILMIDNYDSFTYNLVQYLGELGEELVVKRNDSITIDEIEELSPDFLMISPGPCSPDEAGISLEAIKHFA-GKIPIFGVCLGHQSIAQVFGGDVVRAERLMHGKTSDIEHDGKTIFEGLKNPLVATRYHSLIVKPETLPSCFTVTAQTKEGEIMAIRHNDLPIEGVQFHPESIMTSFGKEMLRNFIETYRKEVIA
2YWB Chain:A ((1-214))
MVLVLDFGSQYTRLIARRLRELRAFSLILPGDAP-LEEVLKHRPQALILSGGPRSVFDPD-APRPDPRLFSSGLPLLGICYGMQLLAQELGGRVERA---EYGKAL-LTRHEGPLFRGLEGEVQVWMSHQDAVT--APPPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFLELAG-----
General information:
TITO was launched using:
RESULT:
Template:
2YWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122597 for 1588 contacts (-77.2/contact) +
2D Compatibility (PS) -18589 + (NN) -2886 + (LL) 1232
1D Compatibility (HY) -6000 + (ID) 2750
Total energy: -151590.0 ( -95.46 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_2YWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YWB-query.scw
PDB file :
Tito_Scwrl_2YWB.pdb
: