Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNIAYIALGSNIGDRETYLRQAVALLHQHAAVTVTKVSSIYETDPVGYEDQAQFLNMAVEIKTSLNPFELLELTQQIENELGRTREV-RWGPRTADLDILLFNRENIETEQLIVPHPRMYERLFVLAPLAEICQQVEKEATSAETDQEGVRVWKQKSGVDEFVHSES
3UD5 Chain:A ((2-135))
---VAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPEL-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3UD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107060 for 989 contacts (-108.3/contact) +
2D Compatibility (PS) -13717 + (NN) -2785 + (LL) 2088
1D Compatibility (HY) -9600 + (ID) 3200
Total energy: -134274.0 ( -135.77 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_3UD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UD5-query.scw
PDB file :
Tito_Scwrl_3UD5.pdb
: