Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFRIGQGFDVHQLVEGRPLIIGGIEIPYEKGLLGHSDADVLLHTVADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLQHVWGIVKQKGYVLGNIDCTIIAQKPKMLPYIEDMRKRIAEGLEADVSQVNVKATTTEKLGFTGRAEGIAAQATVLIQKG
3MBM Chain:B ((24-179))
-FRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLG-SDADVLLHAITDALFGAAALGDIGRHFSDTD---KGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVVR-
General information:
TITO was launched using:
RESULT:
Template:
3MBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118068 for 1262 contacts (-93.6/contact) +
2D Compatibility (PS) -16677 + (NN) -8902 + (LL) 176
1D Compatibility (HY) -14000 + (ID) 4650
Total energy: -162121.0 ( -128.46 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_3MBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MBM-query.scw
PDB file :
Tito_Scwrl_3MBM.pdb
: