Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVIDNNIIVLEDLTLDTAKTKEMAAILKGLSVEK-KALIVTAD---ANEAVALSARNIPGVTVVEA---------------NGINVLDVVNHEKLLITKAAVEKVEEVLA
1DMG Chain:A ((1-225))
-AQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLS-----------------------------------------------------DWSKKLNKKMKKLALRSALSVKYRENKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVLG
General information:
TITO was launched using:
RESULT:
Template:
1DMG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113653 for 1176 contacts (-96.6/contact) +
2D Compatibility (PS) -16911 + (NN) -10067 + (LL) 1340
1D Compatibility (HY) -19200 + (ID) 3100
Total energy: -161591.0 ( -137.41 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_1DMG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DMG-query.scw
PDB file :
Tito_Scwrl_1DMG.pdb
: