Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQDISLSFYKPEHLPELQSFTLTNDDKR---FTSLP------KEVLSQALGIQDRYPVVILKDDLPVGFFILHASKETLASYSNNPFALLLSSLSLTAVHHGKGYAKKAMLLLPAFVSGYFPWCDEIILAVNHLNIRAKHLYMKSGFLDKGRRRIG-----PLGEQLILHHFL
4J3G Chain:A ((22-185))
--MTLLIRHATEADLPALLAIYNDAVENTLAIWNETLVDLENRHQWLENR-NRDGFPVLVAEREGQVVGYASYGPF-RPF----EGFRHSSELSVYVASNARGGGIGRTLLAELIEEARER--KVHVLIAGIEAGNAASIALHRSQGFEECGTLKQVGQKFGRWLDLLFMQKIL
General information:
TITO was launched using:
RESULT:
Template:
4J3G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95503 for 1052 contacts (-90.8/contact) +
2D Compatibility (PS) -16132 + (NN) -4492 + (LL) 672
1D Compatibility (HY) -800 + (ID) 950
Total energy: -117205.0 ( -111.41 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_4J3G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J3G-query.scw
PDB file :
Tito_Scwrl_4J3G.pdb
: