Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MHCAENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGAVWKTHADDYKPEDLQNISSSIAKRLASS 3LB5 Chain:C ((29-133)) -----NNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFHIIPR-------------------------------------

General information: TITO was launched using: RESULT: Template: 3LB5.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 452 -63127 -139.66 -612.88 target 2D structure prediction score : 0.49 Monomeric hydrophicity matching model chain C : 0.76 3D Compatibility (PKB) : -139.66 2D Compatibility (Sec. Struct. Predict.) : 0.49 1D Compatibility (Hydrophobicity) : 0.76 QMean score : 0.454

(partial model without unconserved sides chains): PDB file : Tito_3LB5.pdb: (Unconserved sides chains are recalculated) : Sequence: align-3LB5-query.scw PDB file : Tito_Scwrl_3LB5.pdb: