Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMASIAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNSSKKPLFSVEERCELLREVTKDIPNITVETSQGLLIDYAKRKNAKAILRGLRAVSDFEYEMQGTSVNRVLDESIETFFMMTNNQYSFLSSSIVKEVARYNGSVSEFVPPEVELALQQKFRQG
1VLH Chain:F ((15-169))----AVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENPRKKCMFTLEERKKLIEEVLSDLDGVKVDVHHGLLVDYLKKHGIKVLVRGLRAVTDYEYELQMALANKKLYSDLETVFLIASEKFSFISSSLVKEVALYGGDVTEWVPPEVARALNEKLK--


General information:
TITO was launched using:
RESULT:

Template: 1VLH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain F - contact count / total energy / energy per contact / energy per residue : 728 -118455 -162.71 -764.23
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain F : 0.87

3D Compatibility (PKB) : -162.71
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.87
QMean score : 0.461

(partial model without unconserved sides chains):
PDB file : Tito_1VLH.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1VLH-query.scw
PDB file : Tito_Scwrl_1VLH.pdb: