Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKTINIVAGGPKNLIPDLTGYTDEHTLWIGVDKGTVTLLDA------GIIPVEAFGDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEK------QPDIIQIFGITGGRADHFLGNIQLLYKGVKTN-IKIRLIDKQNHIQMFPPGEYDI--EKDENKRYISFIPFSEDIHELTLTGFKYPLNNCHITLGSTLCISNELIHS-RGTFSFAKGILIMIRSTD
3S4Y Chain:A ((22-245))-KYCLVILNQPLDNY--FRHLWNKALLRACADGGANRLYDITEGERESFLPEFINGDFDSIRPEVREYYATKGCELI-STPDQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLLQPGKHRLHV---MEGDWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETDHPLLWTMAI--


General information:
TITO was launched using:
RESULT:

Template: 3S4Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1107 -157066 -141.88 -766.17
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.74

3D Compatibility (PKB) : -141.88
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.462

(partial model without unconserved sides chains):
PDB file : Tito_3S4Y.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3S4Y-query.scw
PDB file : Tito_Scwrl_3S4Y.pdb: