Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEKKNITLTILLTNLFIAFLGIGLVIPVTPTIMNELHLSGTAVGYMVACFAITQLIVSPIAGRWVDRFGRKIMIVIGLLFFSVSEFLFGIGKTVEMLFISRMLGGISAAFIMPGVTAFIADITTIKTRPKALGYMSAAISTGFIIGPGIGGFLAEV-HSRLPFFFAAAFALLAAILSILTLREPERNPENQ---EI---------------KG------Q----KTGFKRIFAPMYFIAFLIILISSFG-----LASFESLFALFVDHKFGFTASDIAIMITGGAIVGAITQVVLFDRFTRWFGEIHLIRYSLILSTSLVFLLT-------TVHSYVAI-LLVTVTVFVGFDL-MRPAVTTYLSKIAGN-EQGFAGGMNSMFTSIGNVFGPIIGGMLFDID-VNYPFYFATVTLAIGIALTIAWKAPAHLKAST
4LDS Chain:A ((13-406))-----------ALGGLLYGYDNGVISGALLFIHKDIPLNSTTEGIVVSSMLIGAIVGAGSSGPLADKLGRRRLVMLIAIVFIIGALILAASTNLALLIIGRLIIGLAVGGSMSTVPVYLSEMAPTEYRGSLGSLNQLMITIGILAAYLVNYAFADIEGWRWMLGLAVVPSVILLVGI-YFMPESPRWLLENRNEEAARQVMKITYDDSEIDKELKEMKEINAISESTWTVIKSPWLGRILIVGCIFAIFQQFIGINAVIFYSSSIF-AKAGLGEAASILGSVGIGTINV-LVTIVAIFVVDKIDRKKLLVGGNIGMIASLLIMAILIWTIGIASSAWIIIVCLSLFIV-FFGISWGPVLWVMLPELFPMRARGAATGISALVLNIGTLIVSLFFPILSDALSTEWVFLI-------------------------


General information:
TITO was launched using:
RESULT:

Template: 4LDS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1618 -214718 -132.71 -615.24
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : -132.71
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.294

(partial model without unconserved sides chains):
PDB file : Tito_4LDS.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4LDS-query.scw
PDB file : Tito_Scwrl_4LDS.pdb: