Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence---------MKMTSRKLSDILKQRLQHENRSFLFDREKDTLRVEDQTTKKGITLDLPPIIAKWELKKDEAIDEI---------VYYVS-----EAMTAMEGKAQEMTGKETRIYPVIRSTSFPDKSSEDIPLIYDDHTAETRIYYALDLGKTYRLIDQRMLEKENWTKERIRETAA--FNLRSLP-------TVVKEDTVAGNYFYFFRANDGYDASRILNEAI----LNEYKQHAEGELAISVPH-QDVLILADIRNESGYDILGQMSMSFFAGGTVPITALSFLYNEGKLEPVFILAKSRPKKD
3V3T Chain:A ((1-306))MKNKIVFAPIGQGGGNIVDTLLGICGDYNALFINTSKKDLDSLKHAKHTYHIPKERKKAVGYAQTYYKQIIAQIMEKFSSCDIVIFVATMAGGAGSGITPPILGLAKQMYPNKHFGFVGVLPKATEDIDEHMNAIACWNDIMRSTNEGKDISIYLLDNNKREKESDINKEFATLFNDFMNMSESHAEGVVDEDEISKLLTMKKSNVILEFDDKEDIQVALAKSLKESIFAEYTTNTCEFMGISTTRVVDVEAIKSIVGYPRRTFKGYNS------KKNIVVATGIEPQKTTVQMMNEIIEDKMKQR


General information:
TITO was launched using:
RESULT:

Template: 3V3T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1358 68489 50.43 260.41
target 2D structure prediction score : 0.43
Monomeric hydrophicity matching model chain A : 0.59

3D Compatibility (PKB) : 50.43
2D Compatibility (Sec. Struct. Predict.) : 0.43
1D Compatibility (Hydrophobicity) : 0.59
QMean score : 0.238

(partial model without unconserved sides chains):
PDB file : Tito_3V3T.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3V3T-query.scw
PDB file : Tito_Scwrl_3V3T.pdb: