Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMMLNMIRRLLMTCLFLLA--FGTTFLSVSGIEAKDLSKWVQEHQ---------EKHLKHAGLRLKALQQKQTQTTSAAE------DKTKPLEEAFDWDEYPVQRVTATGYTAG-----AESTGKNP------GDPLY--GLTYSGVKVKRDLYSTVAADPSVFPIGTILFIPNYGLGVVADTGSAI--KGNRLDLYFETVKDVYNEWGKKTLDVYVIKKGT--------GKITEDELEKLNETKSLQVFRNQYKTVKE---
1QH5 Chain:A ((1-260))MKVEVLPALTDNYMYLVIDDETKEAAIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLKVYGGDDRIGALTHKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLFVAGCGKFYEGTADEMCKALLEVLGRLPPDTRVYCGHEYTINNLKFARHVEPGNAAIREKLAWAKEKYSI-GEPTVPSTLAEEFTYNPFMRVREKTVQQHAGETDPVTTMRAVRREKDQFKMPRD


General information:
TITO was launched using:
RESULT:

Template: 1QH5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1231 54345 44.15 250.44
target 2D structure prediction score : 0.54
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : 44.15
2D Compatibility (Sec. Struct. Predict.) : 0.54
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.224

(partial model without unconserved sides chains):
PDB file : Tito_1QH5.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1QH5-query.scw
PDB file : Tito_Scwrl_1QH5.pdb: