Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKMLLFLIIAAVSMLTIAGCSSQSSSADGKVTLKFFHRWPKEPEKSYFEEVVKEFEKDHPDIDIQIEAVLNDSYKDKIKVMLGTTSPPDIYFSWSDEFAFKFIRGNKALDLSSYYKNDTDWSSQLVQSQITPFTYENKQYGVPWQMDAKSFFYNKDIFQKLNLD---PPKTWDELIDVSKKLKEHG--YTPISFGTKATWTISHYIGTLNQRMVDEKTREKDYNAKTGEFTDEGYVKALEKLQELM--PYFNKHVNSVDHEYVRQQFKSGKSAMIYAETAEI-KLVE-----PVNLGMFPFPEISGQKGSSEALTGAPEGFMISSRTKHPKEAMEFLQFLTSKRMGEKLVKD-VGKYSAVQGTATE-E-NATAIQREAVQHIVDAKSMVPWFDMDVDVEVADAYLTGVQQMLGGDMTPQQVMKAVQKAAKQVRASAE
5CI5 Chain:A ((22-414))------------------------------SKTLTIWIGGQVAELDETWNSVIKTFEEKY-GISVEVQLFGFDTYYDKLVTALQAGKGPDLAFADLGGWVPTFAEKGWLEPMEEHLKNWEGT-AQIWPNLWPTVTYKKIRYGLPWYTDCRLLLYNKAMFEKAGLNPDNPPKTWDELLDAALKITDTKNRIYGYGVSGTKTEHTTLGYMMF-LYAAGGKLLTDD-YSK-AAFDSPEGLKALKFYTDLAKKYNVSPNAIQYHEDDYRNMMAQNRVAMAIGGPWSFPLIEAANPDIAGKYSVALHPYDAKPA---SVLG--GWALVIPSSSPNKEDAWKLAEYLTSFDVWMKWVEEKGGPMPTRMDVCKKSKLANDVKWQIIFETFPHAVARP-P--IPQYPQISEQIQTMVQRVLLGELTPEEAIKIAAENVNKILGA--


General information:
TITO was launched using:
RESULT:

Template: 5CI5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2192 -29662 -13.53 -78.68
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain A : 0.68

3D Compatibility (PKB) : -13.53
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.430

(partial model without unconserved sides chains):
PDB file : Tito_5CI5.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5CI5-query.scw
PDB file : Tito_Scwrl_5CI5.pdb: