Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRILVVDNYDSFVFNLVQYLGQLGIEAEVWRNDDHRLSDEAAVAGQFDGVLLSPGPGTPERAGASVSIVHACAAAHTPLLGVCLGHQAIGVAFGATVDRAPELLHGKTSSVFHTNVGVLQGLPDPFTATRYHSLTILPKSLPAVLRVTARTSSGVIMAVQHTGLPIHGVQFHPESILTEGGHRILANWLTCCGWTQDDTLVRRLENEVLTAISPHFPTSTASAGEATGRTSA
2YWB Chain:A ((1-228))
-MVLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEE-V--LKHRPQALILSGGPRSVFDPDA-PRPDPRLFSSGLPLLGICYGMQLLAQELGGRVERA---EYGKAL-LTRHEGPLFRGLEGEVQVWMSHQDAVT--APPPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFLELAGVKRDWTPEHVLEEL-------------------------
General information:
TITO was launched using:
RESULT:
Template:
2YWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144216 for 1696 contacts (-85.0/contact) +
2D Compatibility (PS) -20645 + (NN) -6814 + (LL) 1624
1D Compatibility (HY) -5200 + (ID) 2550
Total energy: -177801.0 ( -104.84 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_2YWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YWB-query.scw
PDB file :
Tito_Scwrl_2YWB.pdb
: