Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSV--DLGDVRAVANSDGRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ
1YBX Chain:A ((43-126))
-------------------INNLVKQAQKMQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRKADEMVT--------
General information:
TITO was launched using:
RESULT:
Template:
1YBX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14244 for 457 contacts (-31.2/contact) +
2D Compatibility (PS) -9346 + (NN) -5778 + (LL) 856
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -31562.0 ( -69.06 by residue)
QMean score : 0.350
(partial model without unconserved sides chains):
PDB file :
Tito_1YBX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YBX-query.scw
PDB file :
Tito_Scwrl_1YBX.pdb
: