Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPSFDVVFVGHRR-GEVRSDNAMLGLLCDAAFDEL--TRPDVVIFPGGIGTR-TLIHDQTVLDWVREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLF-NSLGARYVPQRVVEHLPERVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLALEFYQHRL
4E08 Chain:A ((32-189))
--GIKVTVAGLNGGEAVKCS-RDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSLTSYPSMKPQLVNNYSYV-DDKTVVK--DGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLLVAY----------------------------
General information:
TITO was launched using:
RESULT:
Template:
4E08.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98386 for 1161 contacts (-84.7/contact) +
2D Compatibility (PS) -16804 + (NN) -8680 + (LL) 2164
1D Compatibility (HY) -7600 + (ID) 1650
Total energy: -130956.0 ( -112.80 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_4E08.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4E08-query.scw
PDB file :
Tito_Scwrl_4E08.pdb
: