Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKNQNRIRNRWELITCGLGGHVTYAPDDAALAARLRASTGLGEVWRCLRCGDFALGGPQGRGAPEDAPLIMRGKALRQAIIIRALGVERLVRALVLALAAWAVWEFRGARGAIQATLDRDLPVLRAAGFKVDQMTVIHALEKALAAKPSTLALITGMLAAYAVLQAVEGVGLWLLKRWGEYFAVVATSIFLPLEVHDLAKGITTTRVVTFSINVAAVVYLLISKRLFGVRGGRKAYDVERRGEQLLDLERAAMLT |
| 2MDG Chain:A ((1-55)) | -------------MGSHKCNVCSRTFFSENGLREHLQTHRGPAKHYMCPICGE-RFPSLLTLTEHKVTH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2MDG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -3624 for 271 contacts (-13.4/contact) +
2D Compatibility (PS) -6180 + (NN) -2898 + (LL) 20196
1D Compatibility (HY) -400 + (ID) 300
Total energy: 6794.0 ( 25.07 by residue)
QMean score : -0.041
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