Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVTVGVICAIPQELAYLRGVLVDAKRQQVAQILFDSGQLDAHRVVLAAAGMGKVNTGLTATLLADRFGCRTIVFTGVAGGLDPELCIGDIVIADRVVQHDFGLLTDERLRPYQPGHIPFIEPTERLGYPVDPAVIDRVKHRLDGFTLAPLSTAAGGGGRQPRIYYGTILTGDQYLHCERTRNRLHHEL-GGMAVEMEGGAVAQICASFDIPWLVIRALSDLAGADSGVDFNRFVGEVAASSARVLLRLLPVLTAC
4QEZ Chain:B ((2-230))
---RIAVIGAMEEEVRILRDKLEQAETETVAGCEFTKGQLAGHEVILLKSGIGKVNAAMSTTILLERYKPEKVINTGSAGGFHHSLNVGDVVISTEVRHHDVDVTAF----NYEYGQVPGMPP----GFKADEALVALAEKCMQ------------------QVVKGMIATGDSFMSDPNRVAAIRDKFENLYAVEMEAAAVAQVCHQYEVPFVIIRALSDIAGKESNVSFDQFLDQAALHSTNFIVKVLEEL---
General information:
TITO was launched using:
RESULT:
Template:
4QEZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -210688 for 1974 contacts (-106.7/contact) +
2D Compatibility (PS) -23975 + (NN) -8953 + (LL) 1780
1D Compatibility (HY) -20800 + (ID) 3850
Total energy: -266486.0 ( -135.00 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_4QEZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QEZ-query.scw
PDB file :
Tito_Scwrl_4QEZ.pdb
: