Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQIMYNYPAMLGHAGDMAGYAGTLQSLGAEIAVEQAALQSAWQGDTGITYQAWQAQWNQAMEDLVRAYHAMSSTHEANTMAMMARDTAEAAKWGG
3FAV Chain:B ((9-80))
---------GIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQ---------------
General information:
TITO was launched using:
RESULT:
Template:
3FAV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8331 for 410 contacts (-20.3/contact) +
2D Compatibility (PS) -7992 + (NN) -2576 + (LL) 1868
1D Compatibility (HY) -1600 + (ID) 800
Total energy: -19431.0 ( -47.39 by residue)
QMean score : 0.178
(partial model without unconserved sides chains):
PDB file :
Tito_3FAV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FAV-query.scw
PDB file :
Tito_Scwrl_3FAV.pdb
: