Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAVPAVSPQPILAPLTPAAIFLVATIGA--DGEATVHDALSKISGLVRAIGFRDPTKHLSVVVSIGSDAWDRLFAGPRPTELHPFVELTGPRHTAPATPGDLLFHIRAETMDVCFELAGRILKSMGDAVTVVDEVHGFRFFDNRDLLGFVDGTENPSGPIAIKATTIGDEDRNFAGSCYVHVQKYVHDMASWESLSVTEQERVIGRTKLDDIELDDNAKPANSHVALNVITDDDGTERKIVRHNMPFGEVGKGEYGTYFIGYSRTPTVTEQMLRNMFLGDPAGNTDRVLDFSTAVTGGLFFSPTIDFL----DHPPPLPQAATPTLAAGSLSIGSLKGSPR |
3VEE Chain:B ((9-317)) | ---ARLAPQAVLTPPSAASLFLVLVAGDSDDDRATVCDVISGIDGPLKAVGFRELAGSLSCVVGVGAQFWDRVSASSKPAHLHPFVPLSGPVHSAPSTPGDLLFHIKAARKDLCFELGRQIVSALGSAATVVDEVHGFRYFDSRDLLGFVDGTENPTDDDAADSALIGDEDPDFRGGSYVIVQKYLHDMSAWNTLSTEEQERVIGRTKLENVELDDDAQPSNSHVTLNTIVDDDGVEHDILRDAMAFGSLGEAEYGTYFIGYAKDPAVTELMLRRMFLGEPPGNYDRVLDFSTAATGTLFFVPSRDVLESLG----------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VEE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -172189 for 2504 contacts (-68.8/contact) +
2D Compatibility (PS) -32642 + (NN) -18432 + (LL) 1156
1D Compatibility (HY) -29600 + (ID) 9000
Total energy: -260707.0 ( -104.12 by residue)
QMean score : 0.520
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