Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWYL-WRHYLVANVEPNDGHRAIAAWQDHAEV-SVITQNVDDLHERAGSGAVHHLHGSLFEFRCARCGVPYTDALPEMPEPAIEVEPPVC-DCGGL-IRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
1YC2 Chain:C ((20-249))
----VFTGAGISAESGIPTFRGE-DGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKDKLFA--EPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYD--WSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVKRL--
General information:
TITO was launched using:
RESULT:
Template:
1YC2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90732 for 1797 contacts (-50.5/contact) +
2D Compatibility (PS) -24575 + (NN) -11482 + (LL) 1128
1D Compatibility (HY) -20400 + (ID) 4950
Total energy: -151011.0 ( -84.04 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_1YC2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YC2-query.scw
PDB file :
Tito_Scwrl_1YC2.pdb
: