Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVTDDYLANNVDYASGFKGPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVTDDVIRSLAISQRLLGTREIILLHHTDCGMLTFTDDDFKRAIQDETGIRPTWSPESYPDAVEDVRQSLRRIEVNPFVTKHTSLRGFVFDVATGKLNEVTP
1YLK Chain:D ((11-172))
-TVTDDYLANNVDYASGFKGPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVTDDVIRSLAISQRLLGTREIILLHHTDCGMLTFTDDDFKRAIQDETGIRPTWSPESYPDAVEDVRQSLRRIEVNPFVTKHTSLRGFVFDVATGKLNEVTP
General information:
TITO was launched using:
RESULT:
Template:
1YLK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96522 for 1116 contacts (-86.5/contact) +
2D Compatibility (PS) -17360 + (NN) -7268 + (LL) 208
1D Compatibility (HY) -22800 + (ID) 8100
Total energy: -151842.0 ( -136.06 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_1YLK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YLK-query.scw
PDB file :
Tito_Scwrl_1YLK.pdb
: