Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSPLAPVGVFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYGPLTIPEIRAHALAIGDDLVGRGVKALVIACNSASSACLRDARERYQVPVVEVILPAVRRAVAATRNGRIGVIGTRATITSHAYQDAFAAAR-DTEITAVACPRFVDFVERGVTSGRQVLGLA-QGYLEPLQRAEVDTLVLGCTHYPLLSGLIQLAMGENVTLVSSAEETAKEVVRVLTEIDLLRPHDAPPATRIFEATGDPEAFTKLAARFLGPVLGGVQPVHPSRIH
2JFQ Chain:B ((24-274))
------PIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGVIEPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTFSNEHASYTEHPDHRFF-ATGDTTHITNIIKEWLN---------------
General information:
TITO was launched using:
RESULT:
Template:
2JFQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -227238 for 2249 contacts (-101.0/contact) +
2D Compatibility (PS) -27978 + (NN) -15841 + (LL) 856
1D Compatibility (HY) -21200 + (ID) 4950
Total energy: -296351.0 ( -131.77 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_2JFQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JFQ-query.scw
PDB file :
Tito_Scwrl_2JFQ.pdb
: