Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDLPSLDASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKGAQATVAALATALTLRELRAHS
2C9D Chain:J ((15-160))
--------ASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKGAQATVAALATALTLRELRAHS
General information:
TITO was launched using:
RESULT:
Template:
2C9D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109458 for 1146 contacts (-95.5/contact) +
2D Compatibility (PS) -16435 + (NN) -11143 + (LL) 100
1D Compatibility (HY) -18000 + (ID) 7300
Total energy: -162236.0 ( -141.57 by residue)
QMean score : 0.681
(partial model without unconserved sides chains):
PDB file :
Tito_2C9D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2C9D-query.scw
PDB file :
Tito_Scwrl_2C9D.pdb
: