Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSD-HKVPFNRPYMTGRELAYIAEAHSCGHLAGDGPFTRRSHAWLEQQTGCRKALLTPSCTAALEMMALLLDIEEGDEVILPSYTFVSTANAFVLRGGVPVFVDIRPDTLNIDETRIVDAITPRTKAIVPVHYAGVACEMDAIMKIATHHNLAVVEDAAQGAMASYRGRALGSIGDLGALSFHETKNVISGEGGALLVNS
3DR4 Chain:C ((24-220))
---LPRISVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITTGEGGMITTND
General information:
TITO was launched using:
RESULT:
Template:
3DR4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123436 for 1600 contacts (-77.1/contact) +
2D Compatibility (PS) -21628 + (NN) -9957 + (LL) 104
1D Compatibility (HY) -12400 + (ID) 3600
Total energy: -170917.0 ( -106.82 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_3DR4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DR4-query.scw
PDB file :
Tito_Scwrl_3DR4.pdb
: