Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDRIVMEVSRYRPEIESAPTFQAYEVPLTREWAVLDGLTYIKDHLDGTLSFRWSCRMGICGSSGMTINGDPKLACATFLADYLPGPVRVEPMRNFPVIRDLVVDISDFMAKLPSVKPWLVRHDEPPVEDGEYRQTPAELDAFKQFSMCINCMLCYSACPVYALDPDFLGPAAIALGQRYNLDSRDQGAADRRDVLAAADGAWACTLVGECSTACPKGVDPAGAIQRYKLTAATHALKKLLFPWGGG
1KF6 Chain:N ((3-242))
-MKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDG-MKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRT-ADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDFLIATLKP----
General information:
TITO was launched using:
RESULT:
Template:
1KF6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126986 for 1918 contacts (-66.2/contact) +
2D Compatibility (PS) -24692 + (NN) -8187 + (LL) -432
1D Compatibility (HY) -23600 + (ID) 6050
Total energy: -189947.0 ( -99.03 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_1KF6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KF6-query.scw
PDB file :
Tito_Scwrl_1KF6.pdb
: