Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVKNTIAATSFAAAGLAALAVAVSPPAAAGDLVGPGCAEYAAANPTGPASVQGMSQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNSGQ-YTVFAPTNAAFSKLPASTIDELK--TNSSLLTSILTYHVVAGQTSPANVV--GTRQTLQGASVTVTGQGNSLKVGNADVVCGGVSTANATVYMIDSVLMPPA
1W7D Chain:A ((22-157))
--------------------------------------------------------TGDIVETATGAGSFTTLLTAAEA-----AGLVDTLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGEVMSSDLTEGMTAETVEGGALTVTLEG-GPKVNGVSISQPDVDASNGVIHVIDGVLMPGA
General information:
TITO was launched using:
RESULT:
Template:
1W7D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75718 for 1009 contacts (-75.0/contact) +
2D Compatibility (PS) -13970 + (NN) -4738 + (LL) 3380
1D Compatibility (HY) -9200 + (ID) 2600
Total energy: -102846.0 ( -101.93 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_1W7D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W7D-query.scw
PDB file :
Tito_Scwrl_1W7D.pdb
: