Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEAFHTHSGIGVPLRRSNVDTDQIIPAVFLKRVTRTGFEDGLFAGWRSDPAFVLNLSPFDRGSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQDDVELLWKLIEQSPGLEITANLQDRIITAA--TVVLPF-KIDDHSAWRLLEGLDDIALTLRKLDEIEAFEGACAYWKPRTLPAP
2PKP Chain:A ((1-151))
----MIIKGRAHKF-GDDVDTDAIIPGPYLRTTDPYELASHCMAGID--ENFPKK---VKEGDVIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPIIANTD-------EIK--DGDIVEIDLDKEEIVITNKNKTIKCETPKGLEREILAAGG-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2PKP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132852 for 1221 contacts (-108.8/contact) +
2D Compatibility (PS) -15735 + (NN) -4769 + (LL) 3668
1D Compatibility (HY) -6800 + (ID) 2200
Total energy: -158688.0 ( -129.97 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_2PKP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PKP-query.scw
PDB file :
Tito_Scwrl_2PKP.pdb
: