Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVVAEGAYPYCRLTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSSTGAEWVGDRP
4AP8 Chain:D ((3-132))
-----EEKSKDVINFTAEKLSVDEVSQLVISPLCGAISLFVGTTRNNFEGKKVISLEYEAYLPMAENEVRKICSDIRQKWPVKHIAVFHRLGLVPVSEASIIIAVSSAHRAASLEAVSYAIDTLKAKVPIWKKEI------------
General information:
TITO was launched using:
RESULT:
Template:
4AP8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99670 for 975 contacts (-102.2/contact) +
2D Compatibility (PS) -14226 + (NN) -9036 + (LL) 788
1D Compatibility (HY) -9600 + (ID) 2450
Total energy: -134194.0 ( -137.63 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_4AP8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AP8-query.scw
PDB file :
Tito_Scwrl_4AP8.pdb
: