Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------MRTFDLTAALGDRANQPEISRLLVAQLMTSNNEDTRKLRRA--QEREQTQELNELAHRLAGMASLIHAHAVERACHQLEIACGESSVRKLADAVDDLVTALGELQCELHDWMTMTAPQGTAKS
1YVI Chain:A ((1-143))
SAAAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQA---
General information:
TITO was launched using:
RESULT:
Template:
1YVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50557 for 843 contacts (-60.0/contact) +
2D Compatibility (PS) -12925 + (NN) -9773 + (LL) 180
1D Compatibility (HY) -5600 + (ID) 750
Total energy: -79425.0 ( -94.22 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_1YVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YVI-query.scw
PDB file :
Tito_Scwrl_1YVI.pdb
: