Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFMKKLMLAVGLFAVAGSAFAAKPCEELKAEIDAKIKAN--GVPAYTLEIVDKGSVT-------DKKVVGTCDGGTKEIVYQRG
1W8X Chain:P ((1-116))
MDKKKL-----LYWVGGGLVLILIWLWFRNRPAAQVASNWEGPPYMTYNQPQAGSVTLPVADSITSQLNDYASSLNDYLASQAG
General information:
TITO was launched using:
RESULT:
Template:
1W8X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140 for 257 contacts (-0.5/contact) +
2D Compatibility (PS) -6961 + (NN) 2424 + (LL) 548
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -6629.0 ( -25.79 by residue)
QMean score : 0.205
(partial model without unconserved sides chains):
PDB file :
Tito_1W8X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W8X-query.scw
PDB file :
Tito_Scwrl_1W8X.pdb
: