Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKATYSMLSQVTFPLAEAGYYVVPVALADETFRQNGLTSAGDVHQVSPAKLREIYGADAALYVTVSDYGTRYMVISSATIVTASAKLVDLRSGTTLWTGSATASSEEGNGGNNGGLVGMLITAAVKQIINSSVEDAGYPIAGMTSARLLSAGQPGGLLYGPRSPRYGSD |
4GEQ Chain:A ((2-90)) | -------------------NDAAEVALYERLLQLRVLPGASDVH-----DVRFVFGDDSRCWIEVAMHGDHVIGNSHPALDPKSRATLEHVLTVQGDLAAFLVVARDMLLASL-------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GEQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 942 for 585 contacts (1.6/contact) +
2D Compatibility (PS) -9092 + (NN) 626 + (LL) 4064
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -5810.0 ( -9.93 by residue)
QMean score : -0.106
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