Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSQALSIVASGMVSAVGLSAPASCAAIRCALDNFQETRFI--DQGGEWLL-AAS-VPLE------QPWRGRAKLLKMAARAIDEALRGQPDLD--CTELPLLLCVAEGDRPG--------------------RCAGLDESFLRDLEGELGRRFHPSSALIARGRVGGAVALLNARKLI-QGGCRQVLVAGVDSFVSGPTLAAYEARERL-------------LTSQNSNGFIPGEGAAAVLVAAPLH-EE---APQLLCIGLGFGVEKATVESEDLPLRADGLSQAVRAALAEAGCGLEQMDYRLTDISGEQYYFKEASLTLSRNLRVLKPKFDLWHPADCIGECGAAIGPALLAVALAASRKGYGD-------------------------GPNVFCHLGNDAGERAAALLSYRRVRAA |
| 2GP6 Chain:A ((10-416)) | -FPYVVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEFDLPVRIGGHLLEEFDHQLTRIELRRMGYLQRMSTVLSRRLWENAGSPEVDTNRLMVSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAK--AGVMTPVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAP--DPNGERAGHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGN--RPAVYAPKSALGHSVGAVGAVESILTVLALRDQVIPPTLNLVNLDPEIDLDVVAGEPRPGNYRYAINNSFGFGGHNVAIAFGRY----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2GP6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -183030 for 3118 contacts (-58.7/contact) +
2D Compatibility (PS) -34725 + (NN) -9052 + (LL) 1044
1D Compatibility (HY) 2000 + (ID) 2150
Total energy: -225913.0 ( -72.45 by residue)
QMean score : 0.407
|
|
|