Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSLRFALTPGEPAGIGPDLCLLLARSA---QPHPLIAIASRTLLQERAGQLGLAIDLKDVSPAAWPERPAKAGQLYVWDTPLAAPVRPGQLDRANAAYVLETLTRAGQGCLDGHFAGMITAPVHKG-VINEAGIPFSGHTEFLADLTHTAQVVMMLATR----GLRVALATTHLPLREVADAISDERLTRVARILHADLRDKFGIAHPRILVCGLNPHAGEGGHLGREEIEVIEPCLERLRG--EGLDLIGPLPADTLFTPKH----------LEHCDAVLAMYHDQGLPVLKYKGFGAAVNVTLG-------LPIIRTSVDHGTALDLAGSGRIDSGSLQVALETAYQMAASRC |
| 2AF4 Chain:C ((16-318)) | -NKTIALPETE----DI-RTLQAAAKILERGIADIVLVGNEADIKALAGDLDLS-KAKIVDPKT-YEK-K-DE---YINAFYELRKHKGITLENAAEIMSDYVYFAVMMAKLGEVDGVVSGAAHSSSDTLRPAVQIVKTAKGA-ALAS--AFFIISVPDCEYGSDGTFLFAD----SGMVEMPSVEDVANIAVISAKTFE-LLVQDVPKVAMLSY----STKGSAKSKLTEATIASTKLAQELAPDIAIDGELQVDAAIVPKVAASKAPGSPVAGKANVFIFPDLNCGNIAYKIAQRLAKA-EAYGPITQGLAKPINDLSRGC-SDEDIVGAVAITCVQAAAQDK---------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2AF4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -178590 for 2263 contacts (-78.9/contact) +
2D Compatibility (PS) -29308 + (NN) -5509 + (LL) 880
1D Compatibility (HY) -800 + (ID) 2050
Total energy: -215377.0 ( -95.17 by residue)
QMean score : 0.287
|
|
|