Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRAVVELLAGARRLVIFTGAGVSAESGIPTFRDALGGLWARYDPAALATPAAFADDPALVWGWYEWRRLKVLGVQPNPAHRAIAALSGRIAN----TRLVTQNVDDLHERAGSRDVLHLHGSLHAPRCATC---AAAYRD----ALPDSVEPEEGRR-----IEP-PRCP--ACGGQVRPGVVWFGEALPEAALREAFAAACECDLLLSVGTSGVVQPAARIPGLALEHGASVVHVNPQPVRTRHPREHCLVGPAGEVLPELLRRAFPG
4F56 Chain:B ((16-272))
-----KFFAKAKHIVIISGAGVSAESGVPTFRGA-GGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEALA-----
General information:
TITO was launched using:
RESULT:
Template:
4F56.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139711 for 1932 contacts (-72.3/contact) +
2D Compatibility (PS) -25813 + (NN) -13321 + (LL) 1348
1D Compatibility (HY) -17200 + (ID) 5350
Total energy: -200047.0 ( -103.54 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_4F56.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F56-query.scw
PDB file :
Tito_Scwrl_4F56.pdb
: