Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIACLDLEGVLVPE--IWIAFAEKTGIDALKA---TTRDIPDYDVLMKQRLRILDEHGLKLGDIQEVIATLKPLEGAVEFVDWLRE-RFQVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGILF-HAPENVIREFPQFPAVHTYEDLKREFLKASSRSLSL
3M9L Chain:A ((6-200))
IKHWVFDMDGTLTIAVHDFAAIREALSIPAEDDILTHLAAL-PADESAA----K---HAWLLEHERDLAQGSRPAPGAVELVRELAGRGYRLGILTRNARELAHVTLEAIGLADCFAEADVLG-RDE--APPKPHPGGLLKLAEAWDVSPSRMVMVGDYRFDLDCGRAAGTRTVLVNLPDNPWPELTDW-HARDCAQLRDLLSAEGHH----
General information:
TITO was launched using:
RESULT:
Template:
3M9L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107286 for 1437 contacts (-74.7/contact) +
2D Compatibility (PS) -19526 + (NN) -5498 + (LL) 948
1D Compatibility (HY) -1600 + (ID) 1600
Total energy: -134562.0 ( -93.64 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_3M9L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M9L-query.scw
PDB file :
Tito_Scwrl_3M9L.pdb
: