Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNAMALTLAGLLAAPSLGFAAAPDAVM-VFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKPGASVEGDAIFASEDDAVYGASLVRLSDRCK
3NRF Chain:A ((5-106))
-------------------------DAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKPGASVEGDAIFASEDDAVYGASLVRLSDRCK
General information:
TITO was launched using:
RESULT:
Template:
3NRF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48214 for 690 contacts (-69.9/contact) +
2D Compatibility (PS) -10645 + (NN) -477 + (LL) 1888
1D Compatibility (HY) -11200 + (ID) 4900
Total energy: -73548.0 ( -106.59 by residue)
QMean score : 0.737
(partial model without unconserved sides chains):
PDB file :
Tito_3NRF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NRF-query.scw
PDB file :
Tito_Scwrl_3NRF.pdb
: