Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPSSKPLAEYARKRDFRQTPEPSGRKPRKDSTGLLRYCVQKHDASRLHYDFRLELDGTLKSWAVPKGPCLDPAVKRLAVQVEDHPLDYADFEGSIPQGHYGAGDVIVWDRGAWTPLDDPREGLEKGHLSFALDGEKLSGRWHLIRTNLRGKQSQWFLVKAKDGEARSLDRFDVLKERPDSVLSERTLLPRHGEAATPAARPARRGKSGGKTPMPEWIAPELASLVEQPPR-----GEWAYELKLDGYRLMSRIEDGHVRLLTRNGHDWTERLPHLEKALAGLGLQRSWLDGELVVLDEEGRPDFQALQNAFEEG------RGENILYVLFDLPYHEGEDLRDVALEERRARLEALLEGRDEDPLRFSATL----AEDPRDLLASACKLGLEGVIGKRLGSAYRSR-RSNDWIKLKCQ-LRQEFVIVGYTEPKGSR-RHIGALLLGLYSPDEERRLRYAGKVGSGFTAASLKKVRERLEPLAVRSSPLAKVPPARETGSVQWVRPQQLCEVSYAQMTRG------GIIRQAVFHGLREDKPAREVTGERPAGPPPLRGARKASAGASRAATAGVRISHPQRLIDPSIQASKLELAEFHARYADLLLRDLRERPVSLVRGPDGIGGELFFQKHAARLKIPGIVQLDPALDPGHPPLLQIRSAEALVGAVQMGSIEFHTWNASLANLERPDRFVLDLDPDPALPWKRMLEATQLSLTLLDELGLRAFLKTSGGKGMHLLVPLERRHGWDEVKDFAQAISQHLARLMPERFSAVSGPRNRVGKIFVDYLRNSRGASTVAAYSVRAREGLPVSVPVFREELDSLQGANQWNLRSLPQRLDELAGDDPWADYAGTRQRISAAMRRQLGRG |
| 3GDE Chain:A ((217-544)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KMKIEIHIPVRMMLAQVAESLESAVREMRTAAVEWKFDGSRVQVHWDGSRVTIYSRRLENVTNALPDIVEEIKKSVKPGVILDGEVIAVKEGKPMPFQHVLRRFRR-DVAKMVEKIPLEAHFFDILYHDGEC-IDLPLRERRKLLESAVNES--EKIKLAKQIVTDSVDEVRKMYDEAISAGHEGVMIKLPSSPYIPGKRGKNWLKVKAIMETLDLVVVGGEWGEGKRSHWLSSFELACLDP-VTGKLLKVGRVATGFTEEDLEELTEMFRPLIVSQ-----------QGKKVEFIPKYVFEVAYQEIQKSPKYESGYALRFPRFVRLRDDKDVDEADTIERVENLYKLQF------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GDE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -118232 for 2367 contacts (-50.0/contact) +
2D Compatibility (PS) -32036 + (NN) -7898 + (LL) 29748
1D Compatibility (HY) -18400 + (ID) 3950
Total energy: -150768.0 ( -63.70 by residue)
QMean score : 0.415
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